CIITA (Pan troglodytes)
Description [+]
- Synonyms: CIITA
- Species: Metazoa;Bilateria;Deuterostoma;Chordata;Vertebrata;Mammalia;Primates;Hominidae; Pan troglodytes
- Short gene description: MHC class II transactivator (CIITA) [Source:UniProtKB/Swiss-Prot;Acc:P33076]
- Family: Null
- Process:
- Pathways:
- Criteria: homology search
- Curator comment: Null
- WIKI: CIITA-P_troglodytes
Structure & Sequence [+]
Pfam domains:
(Pfam is a large collection of protein families.)
Source | Domain Name | Start | End |
---|---|---|---|
PFAM A | NACHT | 443 | 614 |
Protein sequence [+]
CIITA | Pan troglodytes | 9598 | length:1159
MNNFQAILTQVRMLLSSHQPSLVQALLDNLLKEELLSREYHCTLLHEPDSEALARKISLT
LLEKGDLDLALLGWARSGLQPPAAERGPGHSDHGGSSQCATMELGPLEGGYLELLNSDAD
PVCLYHFYDQMDLAGEEEIELYSEPDTDTINCDQFSRLLCDMEGDEETREAYANIAELDQ
YVFQDSQLEGLSKDIFIEHIGPDEVIGESMEMPAEVGQKSQKRPFPEELPADLKHWKPVP
SSSSSLSCLNLPEGPIQFVPTISTLPHGLWQISEAGTGVSSIFIYHGEVPQASQVPPPSG
FTVHGLPTSPDRPGSTSPFAPSATDLPSMPEPALTSRANMTEHKTSPTQCQAAGEVSNKL
PKWPEPVEQFYRSLQDTYCAEPAGPDGILVEVDLVQARLERSSSKSLERELATPDWAERQ
LAQGGLAEVLLAAKEHRRPRETRVIAVLGKPGQGKSYWAGAVSRAWACGRLPQYDFVFSV
PCHCLNRPGDAYGLQDLLFSLGPQPLVAADEVFSHILKRPDRVLLILDAFEELEAQDGFL
HSTCGPAPAEPCSLRGLLAGLFQKKLLRGCTLLLTARPRGRLVQSLSKADALFELSGFSM
EQAQAYVMRYFESSGMTEHQDRALTLLRDRPLLLSHSHSPTLCRAVCQLSEALLELGEDA
KLPSTLTGLYVGLLGRAALNSPPGALAELAKLAWELGRRHQSTLQQDQFPSADVRTWAMA
KGLVQHPPGAAESELAFPSFLLQCFLGALWLALSGEIKDKELPQYLALTPRKKRPYDNWL
EGVPRFLAGLIFQPRARCLGALVGPSAAALADRKQKVLARYLKRLQPGTLRARQLLELLH
CAHEAEEAGIWQHVVQELPGRLSFLGTRLTPPDAHVLGKALEAAGQDFSLDLRSTGICPS
GLGSLVGLSCVTRFRAALSDTVALWESLRQHGETKLLQAAEEKFTIEPFKAKSLKDVEDL
GKLVQTQRTRSSSEDTAGELPAVRDLKKLEFALGPVSGPQAFPKLVRILTAFSSLQHLDL
DALSENKIGDEGVSQLSATFPQLKSLETLNLSQNNITDLGAYKLAEALPSLAASLLRLSL
YNNCICDVGAESLARVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRRCPHVETLAMWTPT
IPFSVQEHLQQQDSRISLR
LLEKGDLDLALLGWARSGLQPPAAERGPGHSDHGGSSQCATMELGPLEGGYLELLNSDAD
PVCLYHFYDQMDLAGEEEIELYSEPDTDTINCDQFSRLLCDMEGDEETREAYANIAELDQ
YVFQDSQLEGLSKDIFIEHIGPDEVIGESMEMPAEVGQKSQKRPFPEELPADLKHWKPVP
SSSSSLSCLNLPEGPIQFVPTISTLPHGLWQISEAGTGVSSIFIYHGEVPQASQVPPPSG
FTVHGLPTSPDRPGSTSPFAPSATDLPSMPEPALTSRANMTEHKTSPTQCQAAGEVSNKL
PKWPEPVEQFYRSLQDTYCAEPAGPDGILVEVDLVQARLERSSSKSLERELATPDWAERQ
LAQGGLAEVLLAAKEHRRPRETRVIAVLGKPGQGKSYWAGAVSRAWACGRLPQYDFVFSV
PCHCLNRPGDAYGLQDLLFSLGPQPLVAADEVFSHILKRPDRVLLILDAFEELEAQDGFL
HSTCGPAPAEPCSLRGLLAGLFQKKLLRGCTLLLTARPRGRLVQSLSKADALFELSGFSM
EQAQAYVMRYFESSGMTEHQDRALTLLRDRPLLLSHSHSPTLCRAVCQLSEALLELGEDA
KLPSTLTGLYVGLLGRAALNSPPGALAELAKLAWELGRRHQSTLQQDQFPSADVRTWAMA
KGLVQHPPGAAESELAFPSFLLQCFLGALWLALSGEIKDKELPQYLALTPRKKRPYDNWL
EGVPRFLAGLIFQPRARCLGALVGPSAAALADRKQKVLARYLKRLQPGTLRARQLLELLH
CAHEAEEAGIWQHVVQELPGRLSFLGTRLTPPDAHVLGKALEAAGQDFSLDLRSTGICPS
GLGSLVGLSCVTRFRAALSDTVALWESLRQHGETKLLQAAEEKFTIEPFKAKSLKDVEDL
GKLVQTQRTRSSSEDTAGELPAVRDLKKLEFALGPVSGPQAFPKLVRILTAFSSLQHLDL
DALSENKIGDEGVSQLSATFPQLKSLETLNLSQNNITDLGAYKLAEALPSLAASLLRLSL
YNNCICDVGAESLARVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRRCPHVETLAMWTPT
IPFSVQEHLQQQDSRISLR
Structure links:
- Smartdomain prediction information: SM00368
Evolution [+]
Explore tree at phylomeDB:   Click here.
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Gene Ontology [+]
GO id | Name | Ontology type | Evidence |
---|---|---|---|
GO:0006952 | defense response | biological_proccess | IEA |
GO:0045449 | regulation of transcription | biological_proccess | IEA |
GO:0045944 | positive regulation of transcription from RNA polymerase II promoter | biological_proccess | IEA |
GO:0010553 | negative regulation of specific transcription from RNA polymerase II promoter | biological_proccess | IEA |
GO:0034341 | response to interferon-gamma | biological_proccess | IEA |
GO:0046677 | response to antibiotic | biological_proccess | IEA |
GO:0016481 | negative regulation of transcription | biological_proccess | IEA |
GO:0005515 | protein binding | mollecular_function | IEA |
GO:0005524 | ATP binding | mollecular_function | IEA |
GO:0030528 | transcription regulator activity | mollecular_function | IEA |
GO:0010843 | promoter binding | mollecular_function | IEA |
GO:0008022 | protein C-terminus binding | mollecular_function | IEA |
GO:0016564 | transcription repressor activity | mollecular_function | IEA |
GO:0033613 | transcription activator binding | mollecular_function | IEA |
GO:0043130 | ubiquitin binding | mollecular_function | IEA |
GO:0032403 | protein complex binding | mollecular_function | IEA |
Check GO Evidence Codes here
Information from other databases [+]
- Ensembl genome browser [?] : ENSPTRG00000007761
- Expression info from Arrayexpress [?] : ENSPTRG00000007761
- Protein expression from Protein Atlas: [?] ENSPTRG00000007761
- entrezgene: 453914
Click on [?] for more information.