XR_025235.1 (Pan troglodytes)
Description [+]
- Synonyms: XR_025235.1
- Species: Metazoa;Bilateria;Deuterostoma;Chordata;Vertebrata;Mammalia;Primates;Hominidae; Pan troglodytes
- Short gene description: PREDICTED: Pan troglodytes similar to transducin beta-like 3 variant (LOC454343), mRNA. [Source:RefSeq_dna;Acc:XR_025235]
- Family: Null
- Process:
- Pathways:
- Criteria: homology search
- Curator comment: Null
- WIKI: XR_025235.1-P_troglodytes
Structure & Sequence [+]
Pfam domains:
(Pfam is a large collection of protein families.)
Source | Domain Name | Start | End |
---|---|---|---|
PFAM A | WD40 | 98 | 137 |
PFAM A | WD40 | 185 | 223 |
PFAM A | WD40 | 365 | 403 |
PFAM A | WD40 | 410 | 449 |
PFAM A | WD40 | 468 | 506 |
PFAM A | WD40 | 510 | 548 |
PFAM A | WD40 | 552 | 590 |
PFAM A | Utp13 | 653 | 788 |
Protein sequence [+]
XR_025235.1 | Pan troglodytes | 9598 | length:807
MTETAAGVGRFKTNYAVERKIEPFYKGGKAQLDQTGQHLFCVCGTRVNILEVASGAVLRS
LEQEDQEDITAFDLSPDNEVLVTASRALLLAQWAWQEGSVTRLWKAIHTAPVATMAFDPT
STLLATGGCDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSATDAAIRVW
SLQDRSCLAVLTAHYSAVTSLAFSADGHSMLSSGRDKICIIWDLQSCQATRTVPVFESVE
AAVLLPEEPVSQLGVKSPGLYFLTAGDQGTLRVWEAASGQCVYTQAQPPGQRRELTHCTL
AHTPVVLTATTDHNLLLYEAHSLRLQKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLKV
FELQTSACQILHGHTDIVLALDVFRKGWLFASCAKDQSVRIWRMNKAGQVMCVAQGSGHT
HSVGTICCSRLKESFLVTGSQDCTVKLWPLPKALLSKNTAPDNGPILLQAQTTQRCHDKD
INSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMDQVLATASA
DGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNECVRTL
DAHEDKVWGLHCSRLDDRALTGASDSRVILWKDVTEAEQAEEQARQEEQVVRQQELDNLL
HEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATMLRLRRDQKEALLRFCVTW
NTNSRHCHEAQAVLGVLLRREAPEELLAYEGVRAALEALLPYTERHFQRLSRTLQAATFL
DFLWHNMKLPVPAAAPTPWETHKGALP
LEQEDQEDITAFDLSPDNEVLVTASRALLLAQWAWQEGSVTRLWKAIHTAPVATMAFDPT
STLLATGGCDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSATDAAIRVW
SLQDRSCLAVLTAHYSAVTSLAFSADGHSMLSSGRDKICIIWDLQSCQATRTVPVFESVE
AAVLLPEEPVSQLGVKSPGLYFLTAGDQGTLRVWEAASGQCVYTQAQPPGQRRELTHCTL
AHTPVVLTATTDHNLLLYEAHSLRLQKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLKV
FELQTSACQILHGHTDIVLALDVFRKGWLFASCAKDQSVRIWRMNKAGQVMCVAQGSGHT
HSVGTICCSRLKESFLVTGSQDCTVKLWPLPKALLSKNTAPDNGPILLQAQTTQRCHDKD
INSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMDQVLATASA
DGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNECVRTL
DAHEDKVWGLHCSRLDDRALTGASDSRVILWKDVTEAEQAEEQARQEEQVVRQQELDNLL
HEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATMLRLRRDQKEALLRFCVTW
NTNSRHCHEAQAVLGVLLRREAPEELLAYEGVRAALEALLPYTERHFQRLSRTLQAATFL
DFLWHNMKLPVPAAAPTPWETHKGALP
Structure links:
Evolution [+]
Explore tree at phylomeDB:   Click here.
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Gene Ontology [+]
GO id | Name | Ontology type | Evidence |
---|---|---|---|
GO:0006364 | rRNA processing | biological_proccess | IEA |
GO:0032040 | small-subunit processome | cell_component | IEA |
Check GO Evidence Codes here
Information from other databases [+]
- Ensembl genome browser [?] : ENSPTRG00000007621
- Expression info from Arrayexpress [?] : ENSPTRG00000007621
- Protein expression from Protein Atlas: [?] ENSPTRG00000007621
Click on [?] for more information.