APAF1 (Danio rerio)
Description [+]
- Synonyms: APAF1
- Species: Metazoa;Bilateria;Deuterostoma;Chordata;Vertebrata;Pisces; Danio rerio
- Short gene description: Apoptotic protease-activating factor 1 (Apaf-1). [Source:UniProtKB/Swiss-Prot;Acc:Q9I9H8]
- Family: Null
- Process:
- Pathways:
- Criteria: homology search
- Curator comment: Null
- WIKI: APAF1-D_rerio
Structure & Sequence [+]
Pfam domains:
(Pfam is a large collection of protein families.)
Source | Domain Name | Start | End |
---|---|---|---|
PFAM A | CARD | 6 | 90 |
PFAM A | NB-ARC | 129 | 416 |
PFAM A | WD40 | 649 | 687 |
PFAM A | WD40 | 738 | 776 |
PFAM A | WD40 | 874 | 912 |
PFAM A | WD40 | 998 | 1036 |
PFAM A | WD40 | 1083 | 1121 |
PFAM A | WD40 | 1125 | 1163 |
Protein sequence [+]
apaf1 | Danio rerio | 7955 | length:1261
MEERARSRLLRSKATLEQDIKASYLMDHMISDGVLTNDEEAKVLSKATRKEQAVALLETL
LRKDNRAYISFYNALIRESYGDLASLLHSDLPLLSPEGEKSFADGVSPSVQAILSVGGVP
QRPVVFVSRPPLLNLIREMLYRLRDTPGWVTVFGMAGSGKSVMAAEVVRDRSLIKECFPD
GVHWLSVGQCERADLLVRMQSLCFRLEQCQSSDTSQRPPSTVEEAKERLRFLMLRRFPRS
LLILDDVWDSSSLRSFDIQCRVLLTTRNRALTDSVSGVRYEVPVENGLDEEKALEILALY
VNGKMHKLPEQARSIVSECKGSPLVVSLIGALLREFPDRWSYYLRQLQQKQFKRIRKSSS
YDYEALDQAMDASLQVLEAEHQELYRDLSVMQKDIKVPAKVLSVLWGLELEEVEDVLQEF
VNKSLLFRDCNQRPYRYYLHDLQLDFLAEQNRDQIAELHKKMVRQYQRFYSKRPPDSADK
DSLYWYQFIPYHMAKAGLSKELYSLMFSLDWVKEKARIMGSAHLINDYVEYGEILDKENS
EVRVQFQEFLSLNGHHLEQRPFPDVVQLALSQPDRSEVYRQALMQAQKRASRGQIYLNWV
NKNIEEGLSRLVMHPHQGAVYYACFSKDGSKIASCGASKALRVFKSTSGEKLLELQAHEE
DVLCCAFSPDDRHIATCASDKKVKLWNVERGVLIREFEVEHEEQINHCQFTNTGRRVLLA
TCSNDKFTNTKLWNPNKKTSQNTMFGHMEPVNHCCFSPNDLYLATSSSDGSLKLFEVSSA
NEWKSIDVDSFFPESDEEIKAMVKCSTWSADGSQIICAARNTVFVFDVETSDLLLELKTS
RLSTIQFCHACPNSSLLAVALSHYTVELWNFESSKKKAECSGHLSWVHCVQFSPDGSLLL
SSSDDQTIRLWETDRVHTSSAVALKRDTDVLFSHSDATIIAPDSSNRLQVLSGSTGAVVL
ESEELSSRIRCSCISRNAAFVALGSEDGTVQVIEVPSSKASVKLSGHTKTVHHCQFTDDC
EILITSSEDSTIRVWKWRTGECMVLQGHMEPVRKFHLLSSSSSPRLFSWSFDGTVKVWDL
TRGQMLQDLVCHEGAVLSCDVSSDGRLFATTSANRTAKVWSSASWKMIFLLEGHKDCVRS
CRFSWDNKRLATGDDNGEIRLWSMLDGALLKICSRDTKDSMDSYHGGWVTDLHFSPDNRV
LVSTGGYIKWWSVESGEALQTFYTMGGNLKKIHVSPDFSTFITVDSIGILYILKRLEGEG
T
LRKDNRAYISFYNALIRESYGDLASLLHSDLPLLSPEGEKSFADGVSPSVQAILSVGGVP
QRPVVFVSRPPLLNLIREMLYRLRDTPGWVTVFGMAGSGKSVMAAEVVRDRSLIKECFPD
GVHWLSVGQCERADLLVRMQSLCFRLEQCQSSDTSQRPPSTVEEAKERLRFLMLRRFPRS
LLILDDVWDSSSLRSFDIQCRVLLTTRNRALTDSVSGVRYEVPVENGLDEEKALEILALY
VNGKMHKLPEQARSIVSECKGSPLVVSLIGALLREFPDRWSYYLRQLQQKQFKRIRKSSS
YDYEALDQAMDASLQVLEAEHQELYRDLSVMQKDIKVPAKVLSVLWGLELEEVEDVLQEF
VNKSLLFRDCNQRPYRYYLHDLQLDFLAEQNRDQIAELHKKMVRQYQRFYSKRPPDSADK
DSLYWYQFIPYHMAKAGLSKELYSLMFSLDWVKEKARIMGSAHLINDYVEYGEILDKENS
EVRVQFQEFLSLNGHHLEQRPFPDVVQLALSQPDRSEVYRQALMQAQKRASRGQIYLNWV
NKNIEEGLSRLVMHPHQGAVYYACFSKDGSKIASCGASKALRVFKSTSGEKLLELQAHEE
DVLCCAFSPDDRHIATCASDKKVKLWNVERGVLIREFEVEHEEQINHCQFTNTGRRVLLA
TCSNDKFTNTKLWNPNKKTSQNTMFGHMEPVNHCCFSPNDLYLATSSSDGSLKLFEVSSA
NEWKSIDVDSFFPESDEEIKAMVKCSTWSADGSQIICAARNTVFVFDVETSDLLLELKTS
RLSTIQFCHACPNSSLLAVALSHYTVELWNFESSKKKAECSGHLSWVHCVQFSPDGSLLL
SSSDDQTIRLWETDRVHTSSAVALKRDTDVLFSHSDATIIAPDSSNRLQVLSGSTGAVVL
ESEELSSRIRCSCISRNAAFVALGSEDGTVQVIEVPSSKASVKLSGHTKTVHHCQFTDDC
EILITSSEDSTIRVWKWRTGECMVLQGHMEPVRKFHLLSSSSSPRLFSWSFDGTVKVWDL
TRGQMLQDLVCHEGAVLSCDVSSDGRLFATTSANRTAKVWSSASWKMIFLLEGHKDCVRS
CRFSWDNKRLATGDDNGEIRLWSMLDGALLKICSRDTKDSMDSYHGGWVTDLHFSPDNRV
LVSTGGYIKWWSVESGEALQTFYTMGGNLKKIHVSPDFSTFITVDSIGILYILKRLEGEG
T
Structure links:
Evolution [+]
Explore tree at phylomeDB:   Click here.
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Gene Ontology [+]
GO id | Name | Ontology type | Evidence |
---|---|---|---|
GO:0006952 | defense response | biological_proccess | IEA |
GO:0042981 | regulation of apoptosis | biological_proccess | IEA |
GO:0006915 | apoptosis | biological_proccess | IEA |
GO:0005515 | protein binding | mollecular_function | IEA |
GO:0005524 | ATP binding | mollecular_function | IEA |
GO:0000166 | nucleotide binding | mollecular_function | IEA |
GO:0017111 | nucleoside-triphosphatase activity | mollecular_function | IEA |
GO:0008233 | peptidase activity | mollecular_function | IEA |
GO:0005622 | intracellular | cell_component | IEA |
GO:0005737 | cytoplasm | cell_component | IEA |
Check GO Evidence Codes here
KEGG Pathways [+]
Information from other databases [+]
- Gene info from ZFIN [?] ZDB-GENE-000616-4
- Ensembl genome browser [?] : ENSDARG00000021239
- Expression info from Arrayexpress [?] : ENSDARG00000021239
- Protein expression from Protein Atlas: [?] ENSDARG00000021239
- Community gene edition from Wikigenes: [?] 58131
- entrezgene: 58131
- refseq_dna: NM_001045243
- refseq_dna: NM_131608
- refseq_peptide: NP_001038708
- refseq_peptide: NP_571683
Click on [?] for more information.